Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs4963035 chr11:1334306 A/G 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs4963036 chr11:1335174 A/G 1.59E-6 480 61.83 32.63 30.15 KM Plot
PRAD rs4963054 chr11:1375847 C/T 1.5E-6 484 31.28 26.23 61.83 KM Plot
PRAD rs4963061 chr11:1324580 A/G 1.37E-6 486 61.83 32.63 29.8 KM Plot
PRAD rs4963062 chr11:1326641 A/G 1.03E-6 494 61.83 32.05 29.4 KM Plot
PRAD rs4964462 chr12:104423570 C/T 1.12E-5 488 30.8 33.13 38.22 KM Plot
PRAD rs4975015 chr4:39439264 T/C 8.44E-7 489 30.27 31.65 44.38 KM Plot
PRAD rs4975016 chr4:39439719 C/T 4.62E-6 494 30.3 31.28 44.38 KM Plot
PRAD rs4977164 chr8:145144912 T/G 1.56E-5 484 31.13 30.57 19.1 KM Plot
PRAD rs4977583 chr9:22456628 T/C 6.31E-5 487 31.37 28.67 17.47 KM Plot
PRAD rs497761 chr11:71564154 C/G 5.88E-5 493 31.27 28.57 20.93 KM Plot
PRAD rs4978637 chr9:118222448 T/A 1.47E-6 490 20.5 29.68 31.25 KM Plot
PRAD rs4991763 chr20:61662941 C/T 8.5E-6 483 31.07 29.17 24.15 KM Plot
PRAD rs4992882 chr22:18445021 T/G 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs5013012 chr22:18450149 A/G 3.0E-6 488 30.8 31.93 27.08 KM Plot